rs259820578 SNP Detail

Summary

• ID
  rs259820578
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102527878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGTTTGC TTATGGACGA
  TCAAAGTGCC AGCAATTCAC TAATCTTACT ATTGAGGTGG TTCAGGTAGG GATGGAAAAA
  TATCTGCTAC AAAATAAACT GTTTCAACAA AAGAAAAACA AATTAACAAG TAAATAAATG
  ATGCACACAG ACTGAATAAA CCAGCAGGTG GCAGCATGAA TCTTTCCAAG GCATCTGAAG
  S
  CAAACTTGGA GTGCAAAAGG ATTCCTATCT GAATTGAGAA GTAAAGGTTA CTTTGTCTAA
  CTTTAGTTGA CAGAGCGATC AGGATCAGAG TAACAAGCAC ACCAAAAGCA TCACCAGTGA
  GAAGTCACAT AGGACATATT AGGGAAAAAA GACCCAAGGA AGGGCTCTTC ACAGCTAAGA
  GCACCTGGCT CCACGATGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206104	MGP_WTSI_X_100679611	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259820578					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206104	MGP_WTSI_X_100679611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102527878 () rs orientation: forward

Symbol	Name	Function Class
Rr693003	regulatory region 693003	1832 bp distal
Rr693005	regulatory region 693005	1029 bp distal
Rr693006	regulatory region 693006	891 bp distal
Rr693007	regulatory region 693007	within coordinates
Rr693008	regulatory region 693008	23 bp distal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	1570 bp downstream
Tssr163954	transcription start site region 163954	1695 bp upstream
Tssr163955	transcription start site region 163955	1478 bp upstream
Tssr163956	transcription start site region 163956	1423 bp upstream
Tssr163957	transcription start site region 163957	1230 bp upstream
Tssr163958	transcription start site region 163958	1047 bp upstream
Tssr163959	transcription start site region 163959	1020 bp upstream
Xist	inactive X specific transcripts	1039 bp upstream