rs259823662 SNP Detail

Summary

• ID
  rs259823662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44394384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGAATT AGAGGCAGGG
  CTGCTGAAAG TCCATTCTCT GCCAAGGAGG GGTCACCAGG GCAAGAGGAC TGGACTTCCG
  AACGCTTTGG GTCCTTCGCA CTTCATGGTC TCAGGGGACA CAGCAAGAGC AGGCTAGATG
  TGGGAATGGA ACCAGAACCT TATTTCATTC TTTTAACATG CTGCTGATTC GCAGGTGCTG
  Y
  ACCCTGGAGA ATGACCTGGC GCAGAACACC CACCTGGAGA CTGGGTGCTG TAGAAACCTG
  CATCGTCTTT CCCCAAGGCA AACCAGCTTG GTCTAGTCAA GAGTTTGGAG TCAGAATAGT
  TGTGTGGAAA TAACTGCCTT TTGTCCCTTT CTTTTCAAGG ACTGCTCTGG TACAGTGTCC
  TCGGGGTCTG TTCCCTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552337	MGP_WTSI_19_44480435	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259823662					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552337	MGP_WTSI_19_44480435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44394384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	1332 bp proximal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	1735 bp proximal
Gm59215	predicted gene, 59215	820 bp upstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	within coordinates
Tssr5525	transcription start site region 5525	1473 bp downstream
Tssr5526	transcription start site region 5526	1560 bp downstream
Tssr5527	transcription start site region 5527	1570 bp downstream
Tssr5528	transcription start site region 5528	1599 bp downstream
Tssr5529	transcription start site region 5529	1637 bp downstream
Tssr156612	transcription start site region 156612	657 bp upstream
Tssr156613	transcription start site region 156613	738 bp upstream
Tssr159513	transcription start site region 159513	585 bp downstream
Tssr159514	transcription start site region 159514	680 bp downstream
Tssr159515	transcription start site region 159515	686 bp downstream
Tssr159516	transcription start site region 159516	773 bp downstream
Tssr159517	transcription start site region 159517	1544 bp downstream
Tssr159518	transcription start site region 159518	1608 bp downstream
Tssr159519	transcription start site region 159519	1665 bp downstream
Tssr159520	transcription start site region 159520	1714 bp downstream
Tssr159521	transcription start site region 159521	1758 bp downstream
Tssr159522	transcription start site region 159522	1864 bp downstream
Tssr159523	transcription start site region 159523	1886 bp downstream
Tssr159524	transcription start site region 159524	1938 bp downstream