rs259826511 SNP Detail

Summary

• ID
  rs259826511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108779393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCGTGC TCTTCCTCCA
  CCAACACATT CTCTTGTGGT AGTAAAAGAT ATTGCCCAAG AGTAAGTTAT TTTATAATGA
  TGAAGGGGTG AAATCATAAA AAGAGTGCAT CAGGGCTGAA GAGATGGCTC GGTGGTTTAG
  AGCTCTTGTG CTTGCAGAGT GCTGGGGTTC AATTCCCAGC ATCCACATGG CGGCTCACAA
  Y
  CACTTATAAC TCCAGTTCCA GGGGATTCAG CGCCCTCTTT AAACTTCTGT AGGCAGTAAG
  TATGCATGTG GTGCACATAG GTATATGCAG GCAAAAGTCA TACACACAAA AAAAAATTTA
  GTTTAAAACA AAAAAAAAAG ATGTATCAAC TATAAACATG ATTAAAGCCA AATTTATAAA
  GTGTGTTAAC TGAGAAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366206970	MGP_WTSI_5_109060546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259826511					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366206970	MGP_WTSI_5_109060546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108779393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	1218 bp distal
Gak	cyclin G associated kinase	1772 bp upstream
Rr616724	regulatory region 616724	1508 bp distal
Rr616725	regulatory region 616725	915 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	1651 bp downstream
Tssr47845	transcription start site region 47845	1509 bp downstream
Tssr47846	transcription start site region 47846	1477 bp downstream
Tssr52443	transcription start site region 52443	1849 bp upstream
Tssr52444	transcription start site region 52444	1820 bp upstream
Tssr52445	transcription start site region 52445	1766 bp upstream