rs259832779 SNP Detail

Summary

• ID
  rs259832779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79890283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGCAA GAGCCTCCCC
  AGTACTGCAA CAGCTCCGAG TTCCTGGGCT TGGTGTGCGG CCAGGGATAC CCCTGCCGTC
  CTCTTCCCTG GTAGCATATT CTAGGGGTGT CCACAGATCT TATCAGGACG ACCTGAAAGG
  GGCGTACTTA ATGGAAGGAA CCTTGAGACT CCTCCACCTA GTGCCCCAGG ACTTTCTTTC
  Y
  TTGGCACCGG ATTCTTCTCC CCTAGGGGAC CTGGGTTAGG ACACTCAGTT TTCCTGTTTT
  ACAGTGTGCA TCCCGCGATG ATTGGCGCTG TGCGCGCTCC ATGCACGAAT TCTCAGCCAA
  GGACATCGAC GGGCACATGG TCTGCCTGGA TAAGTACAGG TGGGTTTCTA GTCATATGGG
  CGGTGTGCAT GGCTGGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381013940	MGP_WTSI_10_79517194	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259832779					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381013940	MGP_WTSI_10_79517194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79890283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	within coordinates
Gm65896	predicted gene, 65896	469 bp upstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	1463 bp downstream
Rr402035	regulatory region 402035	845 bp downstream
Rr435057	regulatory region 435057	951 bp distal
Rr435058	regulatory region 435058	within coordinates
Rr435059	regulatory region 435059	243 bp distal
Rr435060	regulatory region 435060	12 bp distal
Rr435061	regulatory region 435061	1462 bp proximal
Tssr94472	transcription start site region 94472	1259 bp downstream
Tssr94473	transcription start site region 94473	879 bp downstream
Tssr94474	transcription start site region 94474	784 bp downstream
Tssr94475	transcription start site region 94475	465 bp downstream
Tssr94476	transcription start site region 94476	423 bp downstream
Tssr94477	transcription start site region 94477	406 bp downstream
Tssr94478	transcription start site region 94478	396 bp downstream
Tssr98381	transcription start site region 98381	1035 bp upstream