rs259841877 SNP Detail

Summary

• ID
  rs259841877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10156376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTATTGTTT TCTAAACATT AATTCCTGTT
  ATAGAGCAGT GTAATAGTTT GAAAGTTTCT TCAAATTGTG TCCCACTTTT CTGTTTTTGA
  ATGAATTATT AGAAACCAAA ATCACAGCAT CTGCTCTTTG ATAGATCCTT CGCCAATTCT
  K
  ATTTATTTTT GTTGCTTttt aaatttaaaa ttttaattta attaaaatta aatttgattt
  aaattgtaaa tgaactttaa atttaaattt tgttttcaaa gttagattaa attaaaAGAA
  AAAACACTTC CTGAAATGGA ATTAAGGTTA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320652923	CHEV_3_10091316	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259841877					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10156376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm37308	predicted gene, 37308			1361 bp upstream
Myef2l	myelin expression factor 2 like			Intron
				Noncoding-Transcript-Variant
Rr573569	regulatory region 573569			1224 bp proximal