rs259850689 SNP Detail

Summary

• ID
  rs259850689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT GGTGAGCTGG AGCTGAGAAA
  R
  CTGTGATTAA GAAGAGAGTA CCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss398169439	MGP_WTSI_17_39986122	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs259850689					SNP	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398169439	MGP_WTSI_17_39986122	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160068 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	346 bp distal
Gm26917	predicted gene, 26917	389 bp downstream
Rn18s	18S ribosomal RNA	976 bp distal
Rn18s-rs5	18s RNA, related sequence 5	975 bp downstream
Tssr144610	transcription start site region 144610	1962 bp downstream
Tssr144611	transcription start site region 144611	1839 bp downstream
Tssr144612	transcription start site region 144612	1729 bp downstream
Tssr144613	transcription start site region 144613	1585 bp downstream
Tssr144614	transcription start site region 144614	1563 bp downstream
Tssr144615	transcription start site region 144615	1482 bp downstream
Tssr144616	transcription start site region 144616	1392 bp downstream
Tssr144617	transcription start site region 144617	1365 bp downstream
Tssr144618	transcription start site region 144618	1348 bp downstream
Tssr144619	transcription start site region 144619	1305 bp downstream
Tssr144620	transcription start site region 144620	1282 bp downstream
Tssr144621	transcription start site region 144621	1168 bp downstream
Tssr144622	transcription start site region 144622	1152 bp downstream
Tssr144623	transcription start site region 144623	1122 bp downstream
Tssr144624	transcription start site region 144624	987 bp downstream
Tssr144625	transcription start site region 144625	970 bp downstream
Tssr144626	transcription start site region 144626	941 bp downstream
Tssr144627	transcription start site region 144627	909 bp downstream
Tssr144628	transcription start site region 144628	750 bp downstream
Tssr144629	transcription start site region 144629	676 bp downstream
Tssr144630	transcription start site region 144630	667 bp downstream
Tssr144631	transcription start site region 144631	570 bp downstream
Tssr144632	transcription start site region 144632	460 bp downstream
Tssr144633	transcription start site region 144633	413 bp downstream
Tssr148065	transcription start site region 148065	1393 bp upstream
Tssr148066	transcription start site region 148066	1316 bp upstream
Tssr148067	transcription start site region 148067	1216 bp upstream
Tssr148068	transcription start site region 148068	1118 bp upstream
Tssr148069	transcription start site region 148069	935 bp upstream
Tssr148070	transcription start site region 148070	871 bp upstream
Tssr148071	transcription start site region 148071	845 bp upstream
Tssr148072	transcription start site region 148072	517 bp upstream