rs259854295 SNP Detail

Summary

• ID
  rs259854295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16350638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTACAT GTGCTCAAAT
  TTTAAAACAC CCCAACAAAT GAAGCCTCTC ATTAAAGTTT GTTAGGAGGG CAGGTTCTTG
  TGGTGTGGGC TGAAGAGATC AACAGTTAAA AGTGGGTTCC TCTCCCATCT ATAAAGATCA
  TTACTTGGGG CTGAGGACAG AAGTCATTGG TAGAATGCTT GCATAAATAC ACAAGGCATT
  Y
  GGTTCCATCC TAAGCACAGA GTGTCTGGAG TAAACTAAAG TTAATTTTGT TTTCTGTTTT
  TTGAGACAGG GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA ACTTGCTTTG TAGGCCAGGC
  TGGGCTTGAA CTCAGAGAGA TCTGCCTCTC CCTTCCAAGT GTTGGGATTA AAGGCATTTG
  CCACCATGCC TGGCTAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370695765	MGP_WTSI_7_17202062	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259854295					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370695765	MGP_WTSI_7_17202062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16350638 () rs orientation: forward

Symbol	Name	Function Class
Arhgap35	Rho GTPase activating protein 35	1325 bp upstream
Cpgi18383	CpG island 18383	931 bp distal
Gm29442	predicted gene 29442	1914 bp downstream
Gm29443	predicted gene 29443	within coordinates
Gm44589	predicted gene 44589	248 bp downstream
Rr400125	regulatory region 400125	1037 bp downstream
Rr642707	regulatory region 642707	1731 bp distal
Rr642708	regulatory region 642708	1230 bp distal
Rr642709	regulatory region 642709	1604 bp distal
Rr642710	regulatory region 642710	423 bp proximal
Rr642711	regulatory region 642711	531 bp proximal
Rr642712	regulatory region 642712	1611 bp proximal
Tssr64615	transcription start site region 64615	1093 bp downstream
Tssr70756	transcription start site region 70756	1925 bp upstream
Tssr70757	transcription start site region 70757	1908 bp upstream
Tssr70758	transcription start site region 70758	1853 bp upstream
Tssr70759	transcription start site region 70759	1822 bp upstream
Tssr70760	transcription start site region 70760	1692 bp upstream
Tssr70761	transcription start site region 70761	1646 bp upstream
Tssr70762	transcription start site region 70762	1575 bp upstream
Tssr70763	transcription start site region 70763	1437 bp upstream