rs259855892 SNP Detail

Summary

• ID
  rs259855892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54800506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTTTTG GGAACCCATG
  AAGATCCATG ACATCCGCTG GAACTTTGAG AAGTTCCTGG TGGGGCCAGA TGGCATACCG
  GTTATGCGCT GGTACCACCG GACCACAGTC AGCAACGTCA AGATGGACAT CCTGTCTTAC
  ATGAGGCGGC AGGCAGCCCT GAGCGCCAGG GGGAAGTAAC TGATGCCCCC ACCCTACCCC
  Y
  ACCCCCTGCC CATCATGCAA GGGCCGAGGA GGGGCTCTTC AGGAAGGAAG CCACATTCCC
  AGTCATTCTA CCCCCACCCC AGATTCTCTT TCTTATTACA TAAAAGACAA GCCTGGCACA
  ACTGTGTGTC TGAACCACTG TGGACACGTG ACAATTGTCC CAGTGTGTGC ATGGCTACAC
  AGCCACGTAT CTGCCTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323674147	CHEV_11_54723182	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259855892					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54800506 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1105 bp downstream
Tssr3502	transcription start site region 3502	36 bp upstream
Tssr3503	transcription start site region 3503	435 bp upstream
Tssr101561	transcription start site region 101561	1123 bp downstream
Tssr101562	transcription start site region 101562	1076 bp downstream
Tssr101563	transcription start site region 101563	1064 bp downstream
Tssr101564	transcription start site region 101564	1043 bp downstream
Tssr101565	transcription start site region 101565	613 bp downstream
Tssr101566	transcription start site region 101566	567 bp downstream
Tssr101567	transcription start site region 101567	204 bp downstream
Tssr101568	transcription start site region 101568	130 bp downstream
Tssr101569	transcription start site region 101569	47 bp downstream
Tssr101570	transcription start site region 101570	within coordinates
Tssr101571	transcription start site region 101571	18 bp upstream
Tssr101572	transcription start site region 101572	113 bp upstream
Tssr101573	transcription start site region 101573	150 bp upstream
Tssr101574	transcription start site region 101574	164 bp upstream
Tssr101575	transcription start site region 101575	212 bp upstream
Tssr101576	transcription start site region 101576	226 bp upstream
Tssr101577	transcription start site region 101577	255 bp upstream
Tssr101578	transcription start site region 101578	338 bp upstream
Tssr108007	transcription start site region 108007	1106 bp upstream
Tssr108008	transcription start site region 108008	1045 bp upstream
Tssr108009	transcription start site region 108009	1029 bp upstream
Tssr108010	transcription start site region 108010	609 bp upstream
Tssr108011	transcription start site region 108011	within coordinates
Tssr108012	transcription start site region 108012	11 bp downstream
Tssr108013	transcription start site region 108013	105 bp downstream
Tssr108014	transcription start site region 108014	112 bp downstream
Tssr108015	transcription start site region 108015	195 bp downstream
Tssr108016	transcription start site region 108016	247 bp downstream
Tssr108017	transcription start site region 108017	298 bp downstream
Tssr108018	transcription start site region 108018	313 bp downstream
Tssr108019	transcription start site region 108019	349 bp downstream
Tssr108020	transcription start site region 108020	405 bp downstream
Tssr108021	transcription start site region 108021	425 bp downstream
Tssr108022	transcription start site region 108022	436 bp downstream
Tssr108023	transcription start site region 108023	689 bp downstream