rs259857809 SNP Detail

Summary

• ID
  rs259857809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3332719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCA TGCAATACTA ATTTTTAAAA
  Y
  GCTGAATATT AACAGGTTCA CAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320204333	CHEV_2_3248954	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259857809					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3332719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11150	CpG island 11150			497 bp proximal
Rpp38	ribonuclease P/MRP 38 subunit			Intron
				mRNA-UTR
Rr396749	regulatory region 396749			853 bp upstream
Rr550889	regulatory region 550889			within coordinates
Rr550890	regulatory region 550890			951 bp proximal
Tssr15888	transcription start site region 15888			1476 bp upstream
Tssr22355	transcription start site region 22355			741 bp downstream
Tssr22356	transcription start site region 22356			765 bp downstream
Tssr22357	transcription start site region 22357			884 bp downstream