rs259858531 SNP Detail

Summary

• ID
  rs259858531
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131565139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TCTGGCCAGG CAGTGGTGGC
  G
  CACGCCTTTA ATCCCAGCAC TTGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974765	CHEV_1_133533978	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259858531					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131565139 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	913 bp upstream
Rr12195	regulatory region 12195	62 bp proximal
Rr28482	regulatory region 28482	461 bp proximal
Rr366988	regulatory region 366988	813 bp upstream
Tssr8635	transcription start site region 8635	869 bp upstream
Tssr8636	transcription start site region 8636	905 bp upstream
Tssr8637	transcription start site region 8637	953 bp upstream
Tssr8638	transcription start site region 8638	987 bp upstream
Tssr8639	transcription start site region 8639	1039 bp upstream
Tssr8640	transcription start site region 8640	1084 bp upstream