rs259858727 SNP Detail

Summary

• ID
  rs259858727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12329138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCCATG TCAGCAAAGG
  GATCCAATTC CTGCACAGTT GTGCCTCTTG CGTAAGTGAT TTGTTTTCTA AGGACCTTCA
  TGAGAGCCAG AGAAATTTGC CTTCCCTGGA ATGAGGCCCT GCTGACCCTG GGCTCGCCTG
  GGGCAGAGGG TTGGGCAGTG GGGACCCTAG AGATGGCCCT CTCTGCAATA GGGGAGTGCC
  Y
  ATAGGGTGCT GCCTGGGAGA GAGGTTCAGA AGATAAAATT AACATGGCAT ATGACTGGTT
  GGAAGTGGGC GTTTTGCAGG AGGGGTGAGG GAGCCTGATA GGGTTCTGGC CCTGACAGAG
  GAGCTTATGG GATGAACACT GGAAAATGTA CTGCCGCTGT GTGCTGAGGA GAAAGGTCTG
  AAGAGCAAGT GGTAGGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322497670	CHEV_8_12279138	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259858727					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12329138 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	within coordinates
Rr659697	regulatory region 659697	within coordinates