rs259860074 SNP Detail

Summary

• ID
  rs259860074
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4706017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCTTGG AGACTTGAAG
  GACTAGTGTG TGCACATCTG AGACAACAGT TGTTAACCCT CCACTGAGAT TCTCCTTGTT
  TGTCTTCTGC TGAGTGACCT TGATTAAGTT TGCTTATTTG CATCTCAGTT TCCTCTTCTC
  GGAAAAGGGT GCTTAGAACT ACGCCAGGCA CATAAGATTT TTCTGTAAAT GTTGGCTACT
  R
  TAACTGCTTC AAAGGTAGCT AGATGATTGG CCCAGACCCT GCCTGTATGT GGCAGTGGTG
  TGGCAGATAC TGGAAAGCTA GCTTCCCTCA CCTGGCACCT GAGTACCATT AATGCCCCTT
  CACTTAGGCA GTTGCATAAA ACAACAATGC ATGGCCTGTG CACACACTAC AAATCCACAG
  AACTAGGCAT TTCCAATTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395254953	MGP_WTSI_16_4888153	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259860074					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395254953	MGP_WTSI_16_4888153	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4706017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7923	CpG island 7923	1210 bp distal
Gm60219	predicted gene, 60219	1349 bp upstream
Mgrn1	mahogunin, ring finger 1	within coordinates
Rr510952	regulatory region 510952	1757 bp distal
Rr510953	regulatory region 510953	918 bp distal
Rr510954	regulatory region 510954	2000 bp proximal
Tssr136883	transcription start site region 136883	1948 bp downstream
Tssr136884	transcription start site region 136884	1934 bp downstream
Tssr136885	transcription start site region 136885	1885 bp downstream
Tssr136886	transcription start site region 136886	1869 bp downstream
Tssr136887	transcription start site region 136887	1833 bp downstream