rs259872539 SNP Detail

Summary

• ID
  rs259872539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53861188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTAACT GTTCCTTTAA
  AACTTTTATT TTTTAAATCA CCTAAATCAT TCTTCCAGTC CTCTTCTGGA GCTTTCTAAA
  TTCTTCTTTC GGTCCCCAGA ACTAAATGTA TTTAAAGTTC TCAAAACCAC GCAGAAGAAA
  ACAGGAAAAA TAACTTGAGT CTAAAAATCC AGTGCTGATA GCTCCCACTT AGAGTCAGCC
  R
  CCCCACGTGT ACAGGGAACA GTGTAGTGTA CACACATACA AGCCAGCACA CAGGCATGTT
  GGCATGTGCA TTCCTAGCAT TGCAGAGGCA CCAGCCTTCT TCAGAGCCAC AGAGTACAAG
  ACTTGCCCCC TTCAGAGTGA GTGTCTTCTC ATGGTCAGCA GAGACGAGGC GTGAAAGAGA
  CTTCAGGACT CAGGCAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324044508	CHEV_12_54915392	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259872539					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53861188 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	988 bp distal
Rr267638	regulatory region 267638	1589 bp distal