rs259874665 SNP Detail

Summary

• ID
  rs259874665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47719907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTTTCCG GCCCTGCCAC
  GTCTGAGGAA AAGCCTTTGC GGTGGGGAAA GCCGAGCCTG CCAGGGGGCG AGCGCTGCCA
  GAGGGCGGTG CTCTCGGGCG CGCCACCCTG ACGATACCCA CCCCGCCCCC AACCCCACCA
  GGGAAGCTGC TCGGGAAGGC AGCTGGCACC GCAACTCCCA AAGGCAGTGG CGAGCGGAAG
  Y
  GCGCCCCCCT CAGGCCCCTC CAAGGGCCTA ACATCGTTTT TTCCATGGAC GCCACCCCAC
  GGCTGGCGGC CGCGCGCGCG TAGCCGAGCC CTGGAGCGCG CCGGCCAGCC CTGCCAATCA
  CGAGCCGCGC CCGCCTCCCG CCAGGCCCCG CTCCGCCCCG TGGCCCAGGC CCGCGGCCCG
  CCGCGCACGC GCAGTCGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402629546	MGP_WTSI_19_47805958	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259874665					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629546	MGP_WTSI_19_47805958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47719907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	within coordinates
Gm58934	predicted gene, 58934	within coordinates
Rr370527	regulatory region 370527	194 bp downstream
Rr406020	regulatory region 406020	470 bp upstream
Rr549123	regulatory region 549123	within coordinates
Rr549124	regulatory region 549124	250 bp distal
Rr549125	regulatory region 549125	109 bp distal
Rr549126	regulatory region 549126	within coordinates
Rr549127	regulatory region 549127	81 bp proximal
Rr549128	regulatory region 549128	225 bp proximal
Sfr1	SWI5 dependent recombination repair 1	252 bp upstream
Tssr156884	transcription start site region 156884	275 bp upstream
Tssr156885	transcription start site region 156885	306 bp upstream
Tssr156886	transcription start site region 156886	1477 bp upstream