rs259883336 SNP Detail

Summary

• ID
  rs259883336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151923743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTGCT TGCTCACTGC
  TCGTTCCTCT CTGCGCCTGG CCTGCCCCCA CCGCCGGTTC AGGGGAACGT GTGCGGAGCG
  ATTGTCCTGG GGGACATTTG ATGGATTAGA GCGCTGAACA GTTCCATTGC TGGGGGACCA
  CCTGATCTCC TCCAGCCTGC GTCCCATATA AAGCCGGCAG CCGGAGTGCT GAGCACAGCT
  M
  CAGCGACCGC CTGTGTGCGC GCCGCCGCCG CCGCCGTCGC CGCCGCCGCC GCGCCCGAGC
  GGCACCCGAG CCCGAGCCGC GACCGTCGCC ACCCCGCCGG CTCCGCGGAC GCCCGCCCGC
  TGGGAGCTGT CCAGTGCTGA AGCCGGCGCC GACAGCCAAT CGCGCCGGCC GGCCGCCTCC
  CCCACCGGGC CTCCCGTGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356144208	MGP_WTSI_2_151907559	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	C	C	A	A	C	A	A	C	A	A	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259883336					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	C	C	A	A	C	A	A	C	A	A	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144208	MGP_WTSI_2_151907559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151923743 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	381 bp upstream
Gm75114	predicted gene, 75114	330 bp downstream
Rr567274	regulatory region 567274	1459 bp distal
Rr567275	regulatory region 567275	376 bp distal
Rr567276	regulatory region 567276	284 bp distal
Rr567277	regulatory region 567277	within coordinates
Scrt2	scratch family zinc finger 2	mRNA-UTR
Tssr20749	transcription start site region 20749	993 bp downstream
Tssr20750	transcription start site region 20750	949 bp downstream
Tssr20751	transcription start site region 20751	917 bp downstream
Tssr20752	transcription start site region 20752	884 bp downstream
Tssr20753	transcription start site region 20753	869 bp downstream
Tssr20754	transcription start site region 20754	848 bp downstream
Tssr20755	transcription start site region 20755	686 bp downstream
Tssr20756	transcription start site region 20756	571 bp downstream
Tssr20757	transcription start site region 20757	433 bp downstream
Tssr20758	transcription start site region 20758	199 bp downstream
Tssr20759	transcription start site region 20759	180 bp downstream
Tssr20760	transcription start site region 20760	within coordinates
Tssr20761	transcription start site region 20761	45 bp upstream