rs259884896 SNP Detail

Summary

• ID
  rs259884896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73071155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGCACT TTGGAGGCAG
  AGGCAGGAAG ATGGCCATCC TGGACTATAT AAGAAAAGAC TATAAGATAT AAGAAAAACC
  TATTACACAC ACACTGCAAA TAAAAACAGA ACTCCCTCCT CCAGAATCCT TAACGTTGGG
  AAATGACCCA AATCTTATCA TTTGTTCCTT AGTAACGGGA AACTGAGACA CACACACTCA
  K
  GGTGTTGTTC AGATCTGAAT ACACCACATG GCTCACTTTT GCTCCATGTG AAACACACAT
  GGTATTCCCC GCTCTGTGGT GACAGGCTGA GGTGGGTCCC CGGTCCTAGA GGACTTGTTA
  GATCTTCCTT AACCAAGCCA GTGTTTCAGC CTCACATTCT GCCTCCATGA GTGTGTGATC
  TCTCTACTTT GATGTTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322708321	CHEV_8_74841210	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259884896					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73071155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	1287 bp proximal
Gm63983	predicted gene, 63983	within coordinates
Klf2	Kruppel-like transcription factor 2 (lung)	1751 bp upstream
Rr382265	regulatory region 382265	within coordinates
Rr400967	regulatory region 400967	1515 bp upstream
Rr665299	regulatory region 665299	619 bp distal
Rr665300	regulatory region 665300	217 bp proximal
Rr665301	regulatory region 665301	538 bp proximal
Rr665302	regulatory region 665302	1232 bp proximal
Tssr2606	transcription start site region 2606	1589 bp downstream
Tssr77968	transcription start site region 77968	1570 bp upstream
Tssr77969	transcription start site region 77969	1582 bp upstream
Tssr77970	transcription start site region 77970	1742 bp upstream