rs259902222 SNP Detail

Summary

• ID
  rs259902222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32418471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATGATT AGGGATATTG
  GAGGCAGGGT AATGAAATCA TCTTTTTAAA TAGATTAACT ACTTAGATAG AACGGACCAT
  GTCATTCTGA CCCTAACTTG TCATCCAGAT TCTCTGTTAG ATCATAGAGA AAGGACAGGG
  CAGGATATCA AAACATCTGG ATATAGAAAA TCAGCAATAT ACATAGAGAA CCGAATCAGC
  M
  TGCTCCCAAG ACATGCCTGG GCTTGTTTCT CACATGCTTA CTCCCACCTG ATGAAACCCC
  AGCATGCGTG GCCCCAGAAT CATGCAGCAG TCCTGCAGAA ACAAGGCCCT CCTCCCAGCA
  GAGGCACAAA AAGGCCTTAT TTCAAAGCAA AACACTGGCC GGCCGGGTGG GGTGGGGGTG
  TTTACAGTGC AGGTTTACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357463366	MGP_WTSI_3_32263244	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259902222					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357463366	MGP_WTSI_3_32263244	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32418471 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1167 bp upstream
Cpgi13055	CpG island 13055	622 bp proximal
Rr77496	regulatory region 77496	within coordinates
Rr374783	regulatory region 374783	within coordinates
Tssr28742	transcription start site region 28742	70 bp upstream
Tssr28743	transcription start site region 28743	589 bp upstream
Tssr28744	transcription start site region 28744	984 bp upstream
Tssr28745	transcription start site region 28745	1014 bp upstream
Tssr32923	transcription start site region 32923	822 bp downstream
Tssr32924	transcription start site region 32924	861 bp downstream
Tssr32925	transcription start site region 32925	1101 bp downstream
Tssr32926	transcription start site region 32926	1286 bp downstream
Tssr32927	transcription start site region 32927	1321 bp downstream
Tssr32928	transcription start site region 32928	1570 bp downstream
Zmat3	zinc finger matrin type 3	within coordinates