rs259903169 SNP Detail

Summary

• ID
  rs259903169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113418208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGCAAC TAGATATGTT
  CAGATAGGTA GGTAGGTAGG TAGGTAGGTA GGTAGGTAGG TAGGTAGGTA GAAGAGATCT
  TACTGTATTG CCTAGGCTGA CCTCAAACTC ATGCTTCAAC TTCCCAAGTG CTGTGATCAC
  AGGCATACAC TCCTATGCCC AGTACAGCCA TTTGTTTGCC TTAAAAAATA AAAATCAATT
  W
  AAAAAAATCT TATGTGTGTT TGGGTATTTG ACCTGCGTGT AGGTCTGTAT ACAGTATGAA
  TGCAGTGCCC ACCTAGGCCA GAAGAGGGTG CTAGAGACTC TGGAACTGGA GTTTCAGTGA
  GTTGTGAGCT GTAGGTGTTG GGAGCCAAAC CCCAAAGGGG TGGTGAGATG GATCAGTGGC
  TAAGAGCGAT TGTTCTTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910876	CHEV_6_113391241	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259903169					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113418208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	1135 bp proximal
Gm43928	predicted gene, 43928	353 bp upstream
Jagn1	jagunal homolog 1	1322 bp upstream
Rr399832	regulatory region 399832	1097 bp upstream
Tssr58212	transcription start site region 58212	1324 bp upstream
Tssr58213	transcription start site region 58213	1381 bp upstream