rs259907682 SNP Detail

Summary

• ID
  rs259907682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167430411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGACTG CTCTTCCAGA
  GGTCCTTAGT TCAATTCCCA GCAACCACAT GGTGGCTCAC AACCATCTGT AACAGGATCT
  GATGCCCTCT TCTGGTGTGT CTGAAGACAG CAACAGTACA CTCATATACA TAAAATAAAT
  AAATCTTTCA AAACAAAAAA ACAAAACAAA ACAAAACAAA AAACCCCCAA AACCCAACTC
  Y
  ACTACCACCG TATGTATATG TGTATGTGAG TTTGTATGTA TGCATGTATG TATGTATATG
  TGAGTATGTA TATGTGTAAG TTTGCATGTA TGAGTGAGTG TATATGTATG AGTGAGTGTG
  TTTGTGTGTG AGTGTATATA TAGGTGTGTT TGTGTGTGTG TGTATGGTGT GAGTGTATGA
  GTGTGTATGT GTGTATGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356508114	MGP_WTSI_2_167413991	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259907682					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356508114	MGP_WTSI_2_167413991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167430411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12749	CpG island 12749	493 bp proximal
Gm11476	predicted gene 11476	within coordinates
Gm31619	predicted gene, 31619	within coordinates
Rr397510	regulatory region 397510	852 bp upstream
Rr570646	regulatory region 570646	868 bp distal
Rr570647	regulatory region 570647	101 bp distal
Rr570648	regulatory region 570648	147 bp proximal
Rr570649	regulatory region 570649	915 bp proximal
Rr570650	regulatory region 570650	947 bp proximal
Rr570651	regulatory region 570651	1936 bp proximal
Tssr769	transcription start site region 769	499 bp upstream
Tssr21821	transcription start site region 21821	590 bp upstream
Tssr21822	transcription start site region 21822	1057 bp upstream
Tssr21823	transcription start site region 21823	1101 bp upstream
Tssr27780	transcription start site region 27780	912 bp downstream