rs259912340 SNP Detail

Summary

• ID
  rs259912340
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCTCC TGGAAGCAGA
  GGCAGCCACT CCTGGATTTG TCCCCTCTCT CCCTGGACCC TCCCTATTTT GTTTTTTTTT
  TTGTTTTTGT TTTTTTTTAA ATGAGATTTG ATTCCTGATG TGATGTTTTT GTTTTTGTTT
  TTGTTTTTTA GCATCAGAAG AAGCAAAGAA GCAATGAAGA GAAGTGGAGC GGGGCTGAGG
  M
  TCCAGAGCTC AGCTGGGTAT ACCCTTCCCT GGGAGCTGCA GTGCCTCTTG CTGAGGAGGC
  TTCCTCTCAG AGCTATGTGG TTCCTGGGCT CCTGTGTCTC AGGACGCTCT TCTATTGGGA
  CACTGTCCTA CCTCTGAGCT GTGTGGTTCC TAGGCTACCA TGTCTACCAT TGGGACACTC
  TCTCTGCTAA GAGTTGTGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368223988	MGP_WTSI_6_48503610	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259912340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368223988	MGP_WTSI_6_48503610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	846 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	393 bp downstream
Lrrc61	leucine rich repeat containing 61	1187 bp upstream
Rr399635	regulatory region 399635	907 bp upstream
Rr629686	regulatory region 629686	393 bp distal
Rr629687	regulatory region 629687	25 bp proximal
Rr629688	regulatory region 629688	1152 bp proximal
Rr629689	regulatory region 629689	1205 bp proximal
Tssr56137	transcription start site region 56137	1165 bp upstream
Tssr56138	transcription start site region 56138	1319 bp upstream
Tssr60734	transcription start site region 60734	1046 bp downstream
Tssr60735	transcription start site region 60735	1063 bp downstream
Tssr60736	transcription start site region 60736	1106 bp downstream