rs259912374 SNP Detail

Summary

• ID
  rs259912374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:86249749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATGAGA GCTGGATAGA
  CACCAGCCTC GCCCTCTCTT TTTAAGTTAT AATAAAGAGG TAAAAAAAAT GAAACGATAT
  GGTCTTGTGG TTAATGAACT AGAAATAAAG TCCTGCTGTT CAGGATTCGA AGCTGGAGCC
  AGTCTTTTAC CTCTTTGTGA CTCAGTTTCC TCATCTGTAA AATGAGGAAA ACAAATGTTA
  Y
  GTTTGTTATA TGATGCATGA ATACAACCTG AGCACTAGCC TCGTGCCTGC GCCCGATAAG
  CAGTGTAAGG CATGCATTAC TATACTTCCA TCCTTCCTTT CTGTGGTTAC TTTGAGAAAC
  ACGTGAACTC TGAGAGTGAG AATCAGGAGA ACTGACCCTT TGTTGCTATA GCTGTCCAGT
  GCCTTAAAAT GTTCTAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384126892	MGP_WTSI_11_86172425	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259912374					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384126892	MGP_WTSI_11_86172425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86249749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3473	CpG island 3473	378 bp distal
Gm38937	predicted gene, 38937	1062 bp downstream
Gm74255	predicted gene, 74255	631 bp upstream
Med13	mediator complex subunit 13	1327 bp upstream
Rr402823	regulatory region 402823	442 bp downstream
Rr453539	regulatory region 453539	1332 bp distal
Rr453540	regulatory region 453540	831 bp distal
Rr453541	regulatory region 453541	155 bp distal
Rr453542	regulatory region 453542	457 bp distal
Tssr109840	transcription start site region 109840	1538 bp upstream
Tssr109841	transcription start site region 109841	1309 bp upstream
Tssr109842	transcription start site region 109842	1001 bp upstream
Tssr109843	transcription start site region 109843	751 bp upstream
Tssr109844	transcription start site region 109844	729 bp upstream
Tssr109845	transcription start site region 109845	696 bp upstream
Tssr109846	transcription start site region 109846	664 bp upstream
Tssr109847	transcription start site region 109847	601 bp upstream