rs259918112 SNP Detail

Summary

• ID
  rs259918112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATACCTG GAACCACATC
  TGGTGGCTGT GAGTGGGGCC ATCAGGACAG GGAGCATTTC CTTCTTGGCA ATGTTTATCC
  TGCCAGCAGA TGGCGCTTTA GTACCCTACT GGCCTTTAGT GGCCCATGCT GATCATAGCT
  CTGTTAGTCC CCTGTGTGGG CTGCTTTGTG TATCCTGGAG CATCTTCTTT TAGCTAAAGG
  Y
  GCACAAGCAT ATGAGGAAAT CAAGGATCAG AGATCCACCT AGGGACGCCA TCTTAGCTCC
  GCTCTTCTGT TTTCTAGCTG TGTAGTTTTA AGCCTTGGTT TTCCTAATGG AGGTCAGCAC
  TGCCCCCTTC AGGGATCTAG TGAGAGGACA GATATGAAAT TACCTCCGTG AATGTCTGAG
  CAAGTGAGGT AGACATTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552019	MGP_WTSI_1_137743963	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259918112					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552019	MGP_WTSI_1_137743963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775124 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	351 bp upstream
Tssr226	transcription start site region 226	620 bp downstream
Tssr9010	transcription start site region 9010	1974 bp downstream
Tssr9011	transcription start site region 9011	1784 bp downstream
Tssr9012	transcription start site region 9012	1768 bp downstream
Tssr9013	transcription start site region 9013	1482 bp downstream
Tssr9014	transcription start site region 9014	656 bp downstream
Tssr9015	transcription start site region 9015	316 bp upstream
Tssr9016	transcription start site region 9016	587 bp upstream
Tssr9017	transcription start site region 9017	603 bp upstream
Tssr9018	transcription start site region 9018	648 bp upstream
Tssr9019	transcription start site region 9019	673 bp upstream
Tssr9020	transcription start site region 9020	1419 bp upstream
Tssr9021	transcription start site region 9021	1471 bp upstream
Tssr9022	transcription start site region 9022	1957 bp upstream
Tssr9023	transcription start site region 9023	1976 bp upstream
Tssr13889	transcription start site region 13889	1779 bp upstream
Tssr13890	transcription start site region 13890	370 bp downstream
Tssr13891	transcription start site region 13891	627 bp downstream
Tssr13892	transcription start site region 13892	667 bp downstream
Tssr13893	transcription start site region 13893	705 bp downstream
Tssr13894	transcription start site region 13894	1462 bp downstream
Tssr13895	transcription start site region 13895	1472 bp downstream
Tssr13896	transcription start site region 13896	1992 bp downstream