rs259921780 SNP Detail

Summary

• ID
  rs259921780
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGTGCGA GGAACCCACG
  TGCCCTTAAA TCCTTAAATC CACGTGTCCT TAAATCTCTC TTGCTCCTCC TATTTCTCGA
  CTGCTCCTCC TCCTTCTCGC TTGTCCCTGC CACTTCTCTG ATTCAGGAAC AGGGACTTCT
  CTTTGTACTC ATGCCTTTCT TTTACGGAGA GGAGAGAGGA ATCTGTTTCC TGCATGTGTG
  M
  GGTCATTTAA AGAAGATCTT AACTATAAAA CTTCCACCAT GATTAGAAAT TAGCCTTTGA
  TAGCACTGGA AATGTAATTG AGGAAAATAT GTAATAAAAA ATATTAAAAA AAAAAGAAAT
  TAGCCTTTGA CAGATAAGTC TATAAGAATG AATAAGGTTA TAGGCTTATA ACTGTAGTGA
  GCATTCAAGC TTTTTTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356428092	MGP_WTSI_2_164102123	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259921780					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428092	MGP_WTSI_2_164102123	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118307 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	725 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	429 bp downstream
Tssr21550	transcription start site region 21550	317 bp downstream
Tssr21551	transcription start site region 21551	715 bp upstream
Tssr21552	transcription start site region 21552	759 bp upstream
Tssr27409	transcription start site region 27409	391 bp upstream
Tssr27410	transcription start site region 27410	361 bp upstream
Tssr27411	transcription start site region 27411	336 bp upstream
Tssr27412	transcription start site region 27412	309 bp upstream
Tssr27413	transcription start site region 27413	294 bp upstream
Tssr27414	transcription start site region 27414	282 bp upstream
Tssr27415	transcription start site region 27415	263 bp upstream
Tssr27416	transcription start site region 27416	690 bp downstream
Tssr27417	transcription start site region 27417	699 bp downstream
Tssr27418	transcription start site region 27418	770 bp downstream
Tssr27419	transcription start site region 27419	780 bp downstream
Tssr27420	transcription start site region 27420	800 bp downstream
Tssr27421	transcription start site region 27421	824 bp downstream
Tssr27422	transcription start site region 27422	842 bp downstream
Tssr27423	transcription start site region 27423	880 bp downstream
Tssr27424	transcription start site region 27424	910 bp downstream
Tssr27425	transcription start site region 27425	931 bp downstream
Tssr27426	transcription start site region 27426	1189 bp downstream
Tssr27427	transcription start site region 27427	1867 bp downstream
Tssr27428	transcription start site region 27428	1913 bp downstream
Tssr27429	transcription start site region 27429	1939 bp downstream