rs259935816 SNP Detail

Summary

• ID
  rs259935816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58317852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC TGGATATGGA TGCGCTTTCT
  K
  TAACCTTAAC ACTTGGTGGG GATGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325209489	CHEV_16_58497602	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259935816					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58317852 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	907 bp upstream
Rr517409	regulatory region 517409	within coordinates
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr138857	transcription start site region 138857	1219 bp upstream
Tssr141615	transcription start site region 141615	1844 bp downstream
Tssr141616	transcription start site region 141616	1860 bp downstream
Tssr141617	transcription start site region 141617	1893 bp downstream