rs259937598 SNP Detail

Summary

• ID
  rs259937598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97305875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTGGAA CTCTGTAGGC
  CAAGTTGGCC TCAAACTCAG AGATCTGCCT GCCTCTGCCT CCCGAGTGCT GGGATTAAAA
  GTGTGTTCCA CCACTGCCTG GCTTAGTAGC TACTTGATAA TTGTAATTTT GCTACTATTA
  TGAATCGTAA TGTAAATATC TGATATACTA CCCTGATATA TATCTGATAT GCTACCCCTG
  W
  TGAAAGGCTC GTTCAATTCC CAAAAAGAGT CACGACCCAT AGGTTGAAAA CCAGTGCTCT
  AGAGTATTCC CACCAAACTT TGTCCGTTCT TTCCCTGTCT GAAATGAGAT CAGGATCGAC
  CTCACAGGCT TTCTGGACCT CTGGGTCCGT TTCTGTTCCT TTCTGGCTGC CTTTCCCTGT
  GCTATTTACT GAGTTCGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384390186	MGP_WTSI_11_97276363	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	T	T	T	A	A	A	T	A	T	A	A	A	A	A	A	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259937598					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	T	T	T	A	A	A	T	A	T	A	A	A	A	A	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384390186	MGP_WTSI_11_97276363	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97305875 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	484 bp upstream
Cpgi3698	CpG island 3698	450 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	1689 bp downstream
Rr402912	regulatory region 402912	152 bp upstream
Rr455766	regulatory region 455766	130 bp proximal
Rr455767	regulatory region 455767	984 bp proximal
Rr455768	regulatory region 455768	1273 bp proximal
Tssr104623	transcription start site region 104623	478 bp upstream
Tssr104624	transcription start site region 104624	505 bp upstream
Tssr104625	transcription start site region 104625	528 bp upstream