rs259938133 SNP Detail

Summary

• ID
  rs259938133
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148896434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTGGCA CCGCGAGGTG
  CTGGGCTTGT GCTTCTGCAA AGGTTCTGCG CAGTCCTCGG GTTCCCACCT GGTGGCTCAC
  TACCCCCAGG TTCCCACGGC CAGCTCCACG TGGGGACCAG GTGTGCGGGT GTTGGAGGTG
  GGGGTGGGGA TGGAGGGGGA AGCGTTTTAT GGATGTCGCA GGGGTTGGCG GGGGTGGGGG
  K
  GGGGGTGTCC TGCTCCACGG AGCCTGGCAG GAGCGCCACA CCTCCCCAGC ACGCTCAAGG
  TCCAGCCTGC GGCTCAGCAG GGGACCTCGG GAAGCGGTGC CCCGCCTCCG TGCAGGAGCT
  CTGGGATTGG GCAGGCCCGC AGTTAAGTAT TATAAACAGC CCTCTGGACA ACGAAAGCTG
  ACTTCCTGCA GAAACCTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss367143147	MGP_WTSI_5_149771200	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	T	T	T	T	T	T	T	G	G	T	T	G	T	T	G	G	T	G	G	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C58/J	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs259938133					SNP	G	G	G	G	G	G	T	T	T	T	T	T	T	G	G	T	T	G	T	T	G	G	T	G	G	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367143147	MGP_WTSI_5_149771200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148896434 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	1060 bp downstream
Rr111639	regulatory region 111639	834 bp distal
Rr124806	regulatory region 124806	within coordinates
Rr378799	regulatory region 378799	1472 bp downstream
Rr378800	regulatory region 378800	within coordinates
Tssr49867	transcription start site region 49867	356 bp downstream
Tssr49868	transcription start site region 49868	284 bp downstream
Tssr49869	transcription start site region 49869	167 bp upstream
Tssr54596	transcription start site region 54596	315 bp upstream
Tssr54597	transcription start site region 54597	135 bp upstream
Tssr54598	transcription start site region 54598	50 bp upstream
Tssr54599	transcription start site region 54599	351 bp downstream