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rs259938560 SNP Detail
Summary
  • ID
    rs259938560
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44384955 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGCTTTCCT GAAATCACTG
TGACAGAGGC ACATGAGTTG GAGGTAGGGA GGATCTGGAA GCCACAGAAA GGTGGCACCT
GGCTCTGCTT CCTGAAGCTA CACAGCTCTT CCACACCCAC GGATACTGGG GGAGGAACAG
GCCTGGACAG CAGCAAGTCC TGGGTGCTCT TGATACACTC AGGCAACTAG CTGCATGTCC
R
GAGAAAGAAA AAAAGGCCAA AGAAAGAAAT GTCAGAAGAA ATCAGGTGGG TAAGAGCTTC
CTAGGCAGCA CTAGGCAGGC TGGGTGGCCA CAAAGCAAAG AAGGCATGGA AGGTTCAAAA
CCATGGGAAG CCAAGTTTCT ACACAATCCA AGGAGGAAAC TAAAGCAATG GATGGAGCCA
ACACCATGCG GATCCCTGGC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552099 MGP_WTSI_19_44471006 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259938560 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552099 MGP_WTSI_19_44471006 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44384955 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 639 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 489 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 597 bp proximal
Rr548237 regulatory region 548237 1098 bp distal
Rr548238 regulatory region 548238 353 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 152 bp upstream
Tssr156606 transcription start site region 156606 90 bp downstream
Tssr156607 transcription start site region 156607 216 bp upstream
Tssr156608 transcription start site region 156608 625 bp upstream
Tssr156609 transcription start site region 156609 835 bp upstream
Tssr159446 transcription start site region 159446 1923 bp upstream
Tssr159447 transcription start site region 159447 1748 bp upstream
Tssr159448 transcription start site region 159448 1722 bp upstream
Tssr159449 transcription start site region 159449 1659 bp upstream
Tssr159450 transcription start site region 159450 1645 bp upstream
Tssr159451 transcription start site region 159451 1565 bp upstream
Tssr159452 transcription start site region 159452 1271 bp upstream
Tssr159453 transcription start site region 159453 1202 bp upstream
Tssr159454 transcription start site region 159454 1183 bp upstream
Tssr159455 transcription start site region 159455 877 bp upstream
Tssr159456 transcription start site region 159456 758 bp upstream
Tssr159457 transcription start site region 159457 729 bp upstream
Tssr159458 transcription start site region 159458 695 bp upstream
Tssr159459 transcription start site region 159459 603 bp upstream
Tssr159460 transcription start site region 159460 567 bp upstream
Tssr159461 transcription start site region 159461 506 bp upstream
Tssr159462 transcription start site region 159462 474 bp upstream
Tssr159463 transcription start site region 159463 435 bp upstream
Tssr159464 transcription start site region 159464 405 bp upstream
Tssr159465 transcription start site region 159465 385 bp upstream
Tssr159466 transcription start site region 159466 367 bp upstream
Tssr159467 transcription start site region 159467 303 bp upstream
Tssr159468 transcription start site region 159468 57 bp upstream
Tssr159469 transcription start site region 159469 within coordinates
Tssr159470 transcription start site region 159470 12 bp downstream
Tssr159471 transcription start site region 159471 29 bp downstream
Tssr159472 transcription start site region 159472 65 bp downstream
Tssr159473 transcription start site region 159473 84 bp downstream
Tssr159474 transcription start site region 159474 109 bp downstream
Tssr159475 transcription start site region 159475 154 bp downstream
Tssr159476 transcription start site region 159476 172 bp downstream
Tssr159477 transcription start site region 159477 192 bp downstream
Tssr159478 transcription start site region 159478 202 bp downstream
Tssr159479 transcription start site region 159479 226 bp downstream
Tssr159480 transcription start site region 159480 254 bp downstream
Tssr159481 transcription start site region 159481 303 bp downstream
Tssr159482 transcription start site region 159482 403 bp downstream
Tssr159483 transcription start site region 159483 494 bp downstream
Tssr159484 transcription start site region 159484 528 bp downstream
Tssr159485 transcription start site region 159485 654 bp downstream
Tssr159486 transcription start site region 159486 661 bp downstream
Tssr159487 transcription start site region 159487 742 bp downstream
Tssr159488 transcription start site region 159488 759 bp downstream
Tssr159489 transcription start site region 159489 813 bp downstream
Tssr159490 transcription start site region 159490 915 bp downstream
Tssr159491 transcription start site region 159491 950 bp downstream
Tssr159492 transcription start site region 159492 1001 bp downstream
Tssr159493 transcription start site region 159493 1027 bp downstream
Tssr159494 transcription start site region 159494 1047 bp downstream
Tssr159495 transcription start site region 159495 1165 bp downstream
Tssr159496 transcription start site region 159496 1235 bp downstream
Tssr159497 transcription start site region 159497 1248 bp downstream
Tssr159498 transcription start site region 159498 1260 bp downstream
Tssr159499 transcription start site region 159499 1290 bp downstream
Tssr159500 transcription start site region 159500 1321 bp downstream
Tssr159501 transcription start site region 159501 1336 bp downstream
Tssr159502 transcription start site region 159502 1372 bp downstream
Tssr159503 transcription start site region 159503 1385 bp downstream
Tssr159504 transcription start site region 159504 1464 bp downstream
Tssr159505 transcription start site region 159505 1577 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory