rs259949915 SNP Detail

Summary

• ID
  rs259949915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100579749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAATGC CAGGCTGGCC
  TTAAACTCCC AGACTCCCTA TTTCAGCACC TCAGGCAGCA GTATCTTATT TCCGTCCCTT
  CCTCTTCCTC CTCTCTTCCC CCTCTTCTTT TTCTTCCTCC TCTTACCTCC TCCTCCTCCT
  CCTTGTGCTC CTCCTCCTCC TCCTCCTCTT CCTTCTCCTC TTCTTCTTGA GACAGGGTCT
  Y
  ACTACGTAGC CATAGCTGTC CTGGAACTCA CTACATAGGA CCAACTGGCC TTAAGATCCC
  CCTGCTTTGA TCCCGAGTGC TGGGGTCAGA GGTCAGCACC ACTGCCGGCT TTTTCTGCTT
  CATAGGCTTT TTCTGCTTCA TAAGCGTTTA TTTAGTTCAG GGGCTGGAGA GATGGCTCAG
  CAATTAAGAG CGCTTACTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395181694	MGP_WTSI_15_100512299	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259949915					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395181694	MGP_WTSI_15_100512299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100579749 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	1052 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	604 bp upstream
Tssr136478	transcription start site region 136478	283 bp upstream
Tssr136479	transcription start site region 136479	16 bp downstream
Tssr136480	transcription start site region 136480	52 bp downstream
Tssr136481	transcription start site region 136481	72 bp downstream
Tssr136482	transcription start site region 136482	84 bp downstream
Tssr136483	transcription start site region 136483	90 bp downstream
Tssr136484	transcription start site region 136484	160 bp downstream
Tssr136485	transcription start site region 136485	192 bp downstream
Tssr136486	transcription start site region 136486	964 bp downstream
Tssr136487	transcription start site region 136487	1052 bp downstream
Tssr136488	transcription start site region 136488	1080 bp downstream
Tssr136489	transcription start site region 136489	1112 bp downstream
Tssr136490	transcription start site region 136490	1141 bp downstream
Tssr136491	transcription start site region 136491	1434 bp downstream