rs259956583 SNP Detail

Summary

• ID
  rs259956583
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86236424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGGGAG GTTCCCTGCT
  GAGTTTGTTA ACAGATCTCA GCTCTTTGGT CTGGAAGTGG TAGAAACATA CCAGACCCAG
  AGATACTCAG GCAAGGCTTC TCTGTTAAGA CATGGCTCCA ACCAAGAGCA GGTTTAGGCC
  AGTGGTTCCT AGAACAAAGG AAAGGGGTTA CTCTTACAAT TAAAAAAAAA AAAAAAAAAA
  M
  AAAACTCCAA CCATCCATCC CATCCAGGTT ATCTGAAGGG ATTCAGAACC AAAATGGGTA
  TTGTCTAGTC TTGACTGGTT TGTGTCCCCG TCCTCCCTGT AAGAGTAACA GATTGTAGAA
  AGCTCTGGTC CTGACTGGTC AGGGGCTAAG CAGTCTCATG CAGTTCGCTA AGCAGCTTTG
  ACTCTCAGGG TTGGGTATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350366892	MGP_WTSI_1_88205277	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	C	A	C	A	A	A	A	C	C	A	A	C	A	A	A	C	C	A	C	A	C	A	C	A	C	A	C	C	A	A	C	C	C	A	A	A	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259956583					SNP	C	C	C	A	A	A	A	C	A	C	A	A	A	A	C	C	A	A	C	A	A	A	C	C	A	C	A	C	A	C	A	C	A	C	C	A	A	C	C	C	A	A	A	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350366892	MGP_WTSI_1_88205277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86236424 () rs orientation: forward

Symbol	Name	Function Class
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	1397 bp downstream
Rr366828	regulatory region 366828	within coordinates
Rr414520	regulatory region 414520	662 bp distal
Rr414521	regulatory region 414521	1404 bp proximal
Rr414522	regulatory region 414522	1963 bp proximal
Tssr7739	transcription start site region 7739	1900 bp downstream
Tssr7740	transcription start site region 7740	124 bp downstream
Tssr12766	transcription start site region 12766	299 bp upstream