rs259956896 SNP Detail

Summary

• ID
  rs259956896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACCCCC CCAATCCCCT
  ACCCACCCAC TCCCCCTTTT TGGCCCTGGC GTTCCCCTGT ACTGGGGCAT ATTTTTATTT
  AATTTTAGTT CTGGACATAG AGCCTGAGGC TGCTCATACT AAGCAAGTGC TCTATTGCAG
  AGACGCAGCG CCAACCAGGG ATAGGTCTCA ATTTTCCCTT GGTTATCGAT TTGATATGCC
  R
  ATATCAGCCA CATGTTTACA CTTTTGTTTC ATTCATTTTT AGTGTGTTGT GGGAGCACAA
  TGCTCATGTG GGTATGCAAG TGTATGGAGT CTTCCTGGAT TGCTATACAT TCTATTTTTT
  TTGAAGCACC ATCTTTCTGA GTTCCAAGGA CCTGCCTGTC TCTGCCTCTC TAGTGCCACG
  ATTACAGGCA TTCATATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923786	MGP_WTSI_19_58748908	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259956896					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923786	MGP_WTSI_19_58748908	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	1549 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	151 bp proximal
Tssr5571	transcription start site region 5571	1291 bp downstream
Tssr157266	transcription start site region 157266	1333 bp downstream
Tssr157267	transcription start site region 157267	1314 bp downstream
Tssr157268	transcription start site region 157268	1260 bp downstream
Tssr157269	transcription start site region 157269	667 bp downstream
Tssr157270	transcription start site region 157270	593 bp downstream
Tssr157271	transcription start site region 157271	638 bp upstream
Tssr157272	transcription start site region 157272	649 bp upstream
Tssr157273	transcription start site region 157273	1780 bp upstream
Tssr157274	transcription start site region 157274	1812 bp upstream
Tssr157275	transcription start site region 157275	1832 bp upstream
Tssr157276	transcription start site region 157276	1855 bp upstream
Tssr159959	transcription start site region 159959	1281 bp upstream
Tssr159960	transcription start site region 159960	1233 bp upstream
Tssr159961	transcription start site region 159961	730 bp downstream