rs259957400 SNP Detail

Summary

• ID
  rs259957400
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150880953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACG TGGATATTGT ATTATTTCTC
  Y
  TCTTTGGGCA TTTCCATTCT TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321430179	CHEV_4_150170605	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259957400					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150880953 () rs orientation: forward

Symbol	Name	Function Class
Gm36806	predicted gene, 36806	within coordinates
Gm69570	predicted gene, 69570	within coordinates
Gm69574	predicted gene, 69574	1926 bp upstream
Mir12196	microRNA 12196	1402 bp downstream
Rr605415	regulatory region 605415	1213 bp distal
Tssr1385	transcription start site region 1385	1459 bp downstream