rs259960080 SNP Detail

Summary

• ID
  rs259960080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32429393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCTGGA GCTTCCTCTG
  CAGCCTCAAG CACCAGTTCT CCCCGCACAT CCTGCGCAGC AAGGACGTCT ACGGCTACTC
  CTCGTGCCGG GCACTGGTGC CCGACCCCCC GGCGCCCGAC AGCCGCCCCG CGCGCCGGCC
  GCGCCCGCGC GCAACGCCCA GGAGGAGGCG CCGTGGAGCT CGGGCTGCCG CGGACACCCG
  Y
  AGGCCGCGCC CCGCCGCTGC GGCCGCGGAG CCCGGGCCTC CCGCATCCAG CTTCGGGGGC
  CGCACCCTGG AGGAGATCTG GAGGGCGGCC ACCCCGACGC TGACCAGCTT CCCGACCATC
  CGCGTCGGCG ACGACGTGTG GGGCGAGCGC AGCCTGGCGG TGGCGCGGCG CAGGGCGAGC
  CAAGTGCTGC GAGTGGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385510086	MGP_WTSI_12_33064259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259960080					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385510086	MGP_WTSI_12_33064259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32429393 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	within coordinates
Cpgi4541	CpG island 4541	within coordinates
Rr403262	regulatory region 403262	634 bp downstream
Rr464758	regulatory region 464758	680 bp distal
Rr464759	regulatory region 464759	26 bp distal
Rr464760	regulatory region 464760	144 bp proximal
Rr464761	regulatory region 464761	255 bp proximal
Rr464762	regulatory region 464762	1718 bp proximal
Tssr113128	transcription start site region 113128	687 bp downstream
Tssr113129	transcription start site region 113129	580 bp downstream
Tssr113130	transcription start site region 113130	499 bp downstream
Tssr113131	transcription start site region 113131	465 bp downstream
Tssr113132	transcription start site region 113132	293 bp downstream
Tssr113133	transcription start site region 113133	216 bp downstream
Tssr113134	transcription start site region 113134	160 bp downstream
Tssr113135	transcription start site region 113135	351 bp upstream
Tssr113136	transcription start site region 113136	511 bp upstream