rs259960226 SNP Detail

Summary

• ID
  rs259960226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75544869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTTCCCC CTTCTAAAAT
  AGGATAACAA CATAACTCAT GGTGGTACGT CCGGCACTGA CGGGAGTGAC ATAAGCTAAG
  AACACAGGAA GCGCCTGGCA TGGCGGTGTC CCTCACACCC TTGGTTCCTC ACTTCACTTC
  CCCTCTCTGG ACTCACGCTC CTGTCCAGAG AGGTGGAGCA GGCTAGAAGT AGATGCCGGG
  R
  CTGTGGCTGG CCTCAGGCCC GGAGGGCGGC GGCTACACGC CCTCCTTCCG ATGCGGGGCG
  GTGGCTGCGG GGGCGCCAGC GGGCATCCTA GGAATGCGGC TGCGCCGCTC GGGATGGGTG
  AAGTCCGTCG GACCCCTCCA CGCGCGGATT CCCCTCATTC CAGCCGCTTG ACGCGGCGGG
  GCGGGACGGG GCGGGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383902882	MGP_WTSI_11_75467545	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259960226					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902882	MGP_WTSI_11_75467545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75544869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3271	CpG island 3271	1780 bp distal
Cpgi3272	CpG island 3272	within coordinates
Cpgi3273	CpG island 3273	1430 bp proximal
Gm71962	predicted gene, 71962	240 bp upstream
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	532 bp upstream
Rr451239	regulatory region 451239	1957 bp distal
Rr451240	regulatory region 451240	1168 bp distal
Rr451241	regulatory region 451241	1885 bp distal
Rr451242	regulatory region 451242	1745 bp distal
Rr451243	regulatory region 451243	1582 bp distal
Rr451244	regulatory region 451244	251 bp distal
Rr451245	regulatory region 451245	606 bp distal
Rr451246	regulatory region 451246	within coordinates
Rr451247	regulatory region 451247	1340 bp proximal
Rr451248	regulatory region 451248	1841 bp proximal
Tssr103025	transcription start site region 103025	1801 bp downstream
Tssr103026	transcription start site region 103026	1708 bp upstream
Tssr103027	transcription start site region 103027	1802 bp upstream
Tssr103028	transcription start site region 103028	1868 bp upstream
Tssr103029	transcription start site region 103029	1885 bp upstream
Tssr103030	transcription start site region 103030	1936 bp upstream
Tssr103031	transcription start site region 103031	1960 bp upstream