rs259961772 SNP Detail

Summary

• ID
  rs259961772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81005023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTATGT GCTTCCTGCT
  CTGGTGCATT TTATGGCTCA TGTTTACGGT TGCATTTTGA TGAAGAGAAG GGTTGGGGAT
  GAACAGAATG CGGCCGGGCA GGTGTCCCTG TTCCCTTCGA GCGGCAGCTG GCAGGTGTAG
  GGCTCGCATG GCCCTGTAGT GATGGGGTGT GAGCCTAGTC GGCCCTGTGC AGTGCACATC
  Y
  GGGTCGTCTT GCGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGGTGTG TGTGTGTGTG
  TGTGTGTGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGGTGGGGT GTGAGCCCAG
  TTGGCCCGGT GCAGTGCACA TCCGGGTCGT CTTTCGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss381031922	MGP_WTSI_10_80631934	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs259961772					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031922	MGP_WTSI_10_80631934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81005023 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	1146 bp distal
Cpgi1947	CpG island 1947	6 bp distal
Pias4	protein inhibitor of activated STAT 4	1469 bp upstream
Rr402075	regulatory region 402075	1147 bp downstream
Rr402076	regulatory region 402076	86 bp downstream
Rr402077	regulatory region 402077	294 bp upstream
Rr435533	regulatory region 435533	1277 bp distal
Rr435534	regulatory region 435534	776 bp distal
Rr435535	regulatory region 435535	435 bp distal
Rr435536	regulatory region 435536	225 bp proximal
Tssr94693	transcription start site region 94693	1149 bp downstream
Tssr98565	transcription start site region 98565	1435 bp upstream
Tssr98566	transcription start site region 98566	1408 bp upstream
Tssr98567	transcription start site region 98567	1340 bp upstream
Tssr98568	transcription start site region 98568	1284 bp upstream
Tssr98569	transcription start site region 98569	305 bp upstream