rs259968122 SNP Detail

Summary

• ID
  rs259968122
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130729136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGCTCTTA TTTTGAAGTG GAGGGCAATA
  AGCATCAGGG TCAACTTAGC AGTCTCCAGC AATGCCAAAC CTGGTGATGC TCTGCTCTTC
  CCTCTGCACA TGCAGACCAT CCCAGGAATG GGGATGAAAG CAGAAGAGAG ATTCAGAGGT
  G
  CTAAGGGTGG GCAGGGAAGT CACACACCCA CCTGTGATGG AAGATGAGGT GGCTGTGTTT
  CCCAGTAGAC CTCAGAGGGC CCAAGCTGCT AAGCTCTGAA TGTGGTTGGG GTAACAAAGA
  TCTGGGACTC CCAGAGTCCT GCAGAAAAGA                                 
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319973480	CHEV_1_132697976	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259968122					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130729136 () rs orientation: forward

Symbol	Name	Function Class
Fcamr	Fc receptor, IgA, IgM, high affinity	within coordinates
Rr30371	regulatory region 30371	within coordinates
Rr30372	regulatory region 30372	1466 bp proximal
Tssr8570	transcription start site region 8570	759 bp downstream
Tssr8571	transcription start site region 8571	1683 bp upstream