rs259971723 SNP Detail

Summary

• ID
  rs259971723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69573534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAGTGA GACACGACCG
  GTGTGCCAGG GCGTCCAGTA CATACAAACT TCCCGGATAC CAGTCTGATC GTGGAGAGCC
  TTTCGTTTAT TTGTTTGTTA GTTTGTTTGA GACAGGGTCT CACCATTGTA ACCCCTGGGT
  GGCCTGGAAC TCACTATTTA GACCAAGTTG GCCTCGAACT CATCGAGATC TGCCTCCCGA
  K
  TACTGTGATT TAAGGCGTAA AGCTCAGTGC CCAGCTCGGA AGTGTATAGG AGAATGGGGA
  GGATGAATGG CATGCATATC GAGGCACCTA ACATATATCT TTTTCTAGAT AGTAACAAGA
  ATTTGGACGC AATAGGTGAA ATACTGAAAG CCGGGCTTCT TGTTAATTGA AGCAGAGGGT
  ACTTGAAGAG TTGGATAAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788701	MGP_WTSI_11_69496210	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259971723					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788701	MGP_WTSI_11_69496210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69573534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	415 bp distal
Rr450067	regulatory region 450067	873 bp distal
Rr450068	regulatory region 450068	650 bp distal
Rr450069	regulatory region 450069	134 bp distal
Rr450070	regulatory region 450070	234 bp proximal
Rr450071	regulatory region 450071	1125 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	624 bp upstream
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	138 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	within coordinates
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	within coordinates
Tssr102519	transcription start site region 102519	1615 bp upstream
Tssr102520	transcription start site region 102520	1647 bp upstream
Tssr102521	transcription start site region 102521	1688 bp upstream
Tssr102522	transcription start site region 102522	1781 bp upstream
Tssr102523	transcription start site region 102523	1843 bp upstream
Tssr108774	transcription start site region 108774	904 bp upstream
Tssr108775	transcription start site region 108775	852 bp upstream
Tssr108776	transcription start site region 108776	812 bp upstream
Tssr108777	transcription start site region 108777	755 bp upstream
Tssr108778	transcription start site region 108778	727 bp upstream
Tssr108779	transcription start site region 108779	703 bp upstream
Tssr108780	transcription start site region 108780	629 bp upstream