rs259977010 SNP Detail

Summary

• ID
  rs259977010
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117013367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGGCCG AGCATGCGTC
  GGGAGGCAGG ATGGAGACGG ATGGAGCTCG CTCCCCCGCG GCCCGACCCG GCCCGCAGCA
  ACACTCACCC ATCGCTCGGC GCTGGCTGGA AAGAGGAAGC GCAAAGCTTC ACGGTCCGGT
  TTCTAAAACT CAGCCCCGCC TTCTTTACGT CTCTTCCGGT TGCCGGGAAG GACCTGGGGC
  Y
  GCGGCGAGCC TGGGACGCTG GCACAGGGGA GGGTCCTGCG GCGTGCGAAC TCACGCGGAC
  CCCGCCTCAA ATCCCTTGAC CTTGGGCGGT CTGGAGGGCG GGCTCCTTAA GCTGAGCTAT
  AGGGCACACT TGCCTGCCTG TTGTGCTTAC ATTTTGTCCT TTAAATTTTT TTTTTTTTTT
  TTTTTTTTAA ACCGGGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362964230	MGP_WTSI_4_116828775	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259977010					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362964230	MGP_WTSI_4_116828775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117013367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm26330	predicted gene, 26330	881 bp upstream
Rps8	ribosomal protein S8	38 bp upstream
Rr377051	regulatory region 377051	1658 bp downstream
Rr398411	regulatory region 398411	within coordinates
Rr598069	regulatory region 598069	63 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	1596 bp upstream
Snord55	small nucleolar RNA, C/D box 55	322 bp upstream
Tssr42956	transcription start site region 42956	322 bp upstream
Tssr42957	transcription start site region 42957	85 bp upstream
Tssr42958	transcription start site region 42958	27 bp upstream
Tssr42959	transcription start site region 42959	within coordinates
Tssr42960	transcription start site region 42960	15 bp downstream
Tssr42961	transcription start site region 42961	29 bp downstream