rs259981442 SNP Detail

Summary

• ID
  rs259981442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATATTAT TTTGGCTTGA
  ATTCTAGACA AGTGAGATAG AAGATCTTTC TTGAAGCTCC GTTAAGGGAA GGCTATTTCT
  TCTTGGTAAA GCATAGCTAT TTTATTGACC TATTTTAAAA AATTAGTTTA ACCCACTCAG
  TGGCTTGAGT TTTGCTCAGA AGAATCGGAC TTGGGTCACA TCATCAGCAG ATGTTCCAAA
  Y
  GGCACCAAAC AGTATAAGAT TAAAGCAGCT GCTTACAGCC TTTCTGTGAC TGAGTCAGCT
  TGCTGGTGCA GTCTCTAACC CAGCAAGCGT GATTAGCTTT CTTTTCCTTT GCAATCTCTC
  CTTTCTGGTT TCCTGTACGG TTTGTCTGCT CTGCTAATTT TTTCCTCTCT CCAACTCCAA
  AAAAGTTATC CTCAGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002345	CHEV_3_142159170	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259981442					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201967 () rs orientation: forward

Symbol	Name	Function Class
Gbp5	guanylate binding protein 5	728 bp upstream
Rr398084	regulatory region 398084	294 bp upstream
Rr586444	regulatory region 586444	1958 bp distal
Rr586446	regulatory region 586446	204 bp proximal
Rr586447	regulatory region 586447	705 bp proximal
Tssr32047	transcription start site region 32047	566 bp upstream
Tssr32048	transcription start site region 32048	585 bp upstream
Tssr32049	transcription start site region 32049	609 bp upstream
Tssr32050	transcription start site region 32050	667 bp upstream
Tssr32051	transcription start site region 32051	718 bp upstream