rs259981690 SNP Detail

Summary

• ID
  rs259981690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79491497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGTCTCC TGAAGTCTCC
  AACCTCTCCC TTTCCATAAG CCCCAGATGC AGCCCTGTGT CAGACCGTGC CCACGCCCTT
  GAACCTTACT TCTTGACGTC TCCTTCCATG TACTCGCTGC GGTAGAAGCC AGCCAGGTCA
  TCAGCCAGTT CCCCCTGGAA CTGGCTGTCC ATCTCGTACT GACGGCCCTC TACCAGGGAC
  Y
  CCTGCAGGTG CACCACCAGG TACTCAGTAC GCTCTACCAG TTCCGTTTTG TCAATGTTAG
  GTGCCGGAGT GCCGTCCAGG GTTCGCAACA CCACCCTGTG GTTTCCTTTG AGGGTGTAGT
  TGAGCTTTTT GCTGTGGATG ATAATGACAT CCGTGGTCTG GTTGCAGGTA AAGCGAACAG
  TACTGTTGCC TTGGAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032945	MGP_WTSI_7_86986635	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259981690					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032945	MGP_WTSI_7_86986635	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79491497 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	670 bp upstream
Tssr67371	transcription start site region 67371	80 bp upstream
Tssr67372	transcription start site region 67372	268 bp upstream
Tssr67373	transcription start site region 67373	728 bp upstream
Tssr67374	transcription start site region 67374	774 bp upstream
Tssr67375	transcription start site region 67375	808 bp upstream
Tssr73161	transcription start site region 73161	832 bp upstream
Tssr73162	transcription start site region 73162	774 bp upstream
Tssr73163	transcription start site region 73163	753 bp upstream
Tssr73164	transcription start site region 73164	590 bp upstream
Tssr73165	transcription start site region 73165	44 bp upstream
Tssr73166	transcription start site region 73166	12 bp upstream
Tssr73167	transcription start site region 73167	185 bp downstream
Tssr73168	transcription start site region 73168	197 bp downstream
Tssr73169	transcription start site region 73169	225 bp downstream
Tssr73170	transcription start site region 73170	256 bp downstream
Tssr73171	transcription start site region 73171	327 bp downstream
Tssr73172	transcription start site region 73172	355 bp downstream
Tssr73173	transcription start site region 73173	371 bp downstream
Tssr73174	transcription start site region 73174	459 bp downstream
Tssr73175	transcription start site region 73175	480 bp downstream
Tssr73176	transcription start site region 73176	538 bp downstream
Tssr73177	transcription start site region 73177	568 bp downstream
Tssr73178	transcription start site region 73178	594 bp downstream
Tssr73179	transcription start site region 73179	658 bp downstream
Tssr73180	transcription start site region 73180	725 bp downstream
Tssr73181	transcription start site region 73181	808 bp downstream
Tssr73182	transcription start site region 73182	827 bp downstream
Tssr73183	transcription start site region 73183	866 bp downstream
Tssr73184	transcription start site region 73184	1526 bp downstream