rs259984497 SNP Detail

Summary

• ID
  rs259984497
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134943812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGAGGG TTTATGTCGT
  CCTCCCCATA GGGGAAAGGG AAAGTCAGAG AACAGAGACA CGCAGGCTGC TACCAGCCAT
  TTTGAAATTT ATGTTTAAAA GAAATCTCTG AAGTTACAAA TTACATATTA CTTCTGTACA
  TCCAAGGGAT GTTTCATTTA CTATATCCTA TTTACTGAAC TAAGGACAGG TTTTTTTTTT
  K
  GGGGGGGGGT ATTGTTTAGT GACTCAATAA TATCATTTCT TCTCCACGAA ACTCCTAGAA
  ATTTTAGCAT TTAGAAGATG AGGGAAAATA CAGTTGGCTC AGCTGAGGTG CAGCCTCTTG
  GAGCTAGTAA TTATGTCCCA TCTGTTTGGA GAAATAAGTT GGCTTTTAAG AGAGTAAATG
  GGGTAACAAT TTAATTAAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	RF/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355769590	MGP_WTSI_2_134927628	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	RF/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259984497					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355769590	MGP_WTSI_2_134927628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134943812 () rs orientation: forward

Symbol	Name	Function Class
Plcb1	phospholipase C, beta 1	Intron
Rr565720	regulatory region 565720	122 bp distal
Rr565721	regulatory region 565721	57 bp proximal