rs259990506 SNP Detail

Summary

• ID
  rs259990506
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172332858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGGCCT GGTTATGTCC
  TCTCCACAGC TCTTTGCCAT CACCACAGCT GCTCAGAATG GCCAACAGGG GACCTTCCTA
  CGGCCTGAGC CGAGAGGTGC AGCAGAAGAT TGAGAAGCAG TACGACGCGG ATCTGGAGCA
  GATCCTCATC CAGTGGATCA CCACTCAGTG CCGTGAGGAC GTGGGCCAGC CCCAGCCTGG
  S
  CGTGAGAACT TCCAGAAGTG GCTCAAGGAC GGCACGGTGA GTGCTGGATG GGTGAGCGGG
  GCAAGCAGGG CGAGCAGGGC TGATGCTGGG GGACCAGGGA GCGTTTTACA CAGTGAAGAG
  GAGAAAGCGA GCATGCAAAC CCAAGCTTGC CAGCCTGAGC ATCTTCCTGG GGGCCCTTAG
  AGCTTCCATG CTTTTCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352407689	MGP_WTSI_1_174435422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259990506					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352407689	MGP_WTSI_1_174435422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172332858 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	1257 bp distal
Rr29014	regulatory region 29014	457 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	within coordinates
Tssr10220	transcription start site region 10220	460 bp upstream
Tssr10221	transcription start site region 10221	502 bp upstream
Tssr10222	transcription start site region 10222	588 bp upstream
Tssr10223	transcription start site region 10223	935 bp upstream
Tssr10224	transcription start site region 10224	1281 bp upstream
Tssr10225	transcription start site region 10225	1320 bp upstream
Tssr10226	transcription start site region 10226	1333 bp upstream
Tssr10227	transcription start site region 10227	1374 bp upstream
Tssr10228	transcription start site region 10228	1426 bp upstream
Tssr10229	transcription start site region 10229	1476 bp upstream
Tssr10230	transcription start site region 10230	1497 bp upstream
Tssr10231	transcription start site region 10231	1560 bp upstream
Tssr10232	transcription start site region 10232	1604 bp upstream
Tssr10233	transcription start site region 10233	1635 bp upstream
Tssr10234	transcription start site region 10234	1694 bp upstream
Tssr15226	transcription start site region 15226	1561 bp downstream
Tssr15227	transcription start site region 15227	1654 bp downstream