rs259991937 SNP Detail

Summary

• ID
  rs259991937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74498456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGCTGA AGAGGGGTGG
  GGACCGGGTG GGTGGGTCCA GCCGGACCTG GGCTGGGAGC CAGGCTCTCC CGCGCCCCCA
  CCCCCACGTG TCCCGGCGCA GCCAATGGCA GGGTCCCCGG CCGGCGCCCT CGGGGCGGGA
  GACGGCCCCC TGACCGTCCC AGGCCCCCTC CCAACCTGAA CTTCGTTTTT ATAAACGTCC
  S
  GCGATGAGCT AACCTGTTGG AGGGCGGGCG GGCGGGCGGG CGGGCAGGAG GCGGGAGGCT
  CGCGGAGGGA GAGAGGACGG GAGGGAAAGG GCGGGAGCGA GCGCGCCGCG GAACACAGCG
  AGGAGGGAGG AGGCGCAGCG CGCCATGGTG TCCTGCGCGG GGCCGAGGCC GGGGCCCGGG
  CCGGGCCAGG CCGGGCCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484621	MGP_WTSI_2_74506169	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259991937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484621	MGP_WTSI_2_74506169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74498456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11788	CpG island 11788	659 bp distal
Cpgi11789	CpG island 11789	within coordinates
Gm31790	predicted gene, 31790	432 bp downstream
Hoxd13	homeobox D13	198 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559337	regulatory region 559337	1202 bp distal
Rr559338	regulatory region 559338	within coordinates
Tssr18389	transcription start site region 18389	839 bp downstream
Tssr18390	transcription start site region 18390	95 bp upstream