rs259992250 SNP Detail

Summary

• ID
  rs259992250
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21097780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTAT TCAGTGTGTT ATTGTTGATT
  W
  TCAAATTTAG CATTTTTTTA TAACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323594001	CHEV_11_21047783	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259992250					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21097780 () rs orientation: forward

Symbol	Name	Function Class
Peli1	pellino 1	within coordinates
Tssr100551	transcription start site region 100551	1040 bp upstream
Tssr100552	transcription start site region 100552	1279 bp upstream
Tssr100553	transcription start site region 100553	1309 bp upstream
Tssr100554	transcription start site region 100554	1422 bp upstream
Tssr100555	transcription start site region 100555	1933 bp upstream