rs259997060 SNP Detail

Summary

• ID
  rs259997060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164618821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCCA GCTTTGGGCC
  TGGAACGCTG CATCCTACTT GTGTGTAAAG TGCATCCATT TGGGATGGAT GGACAAACTC
  TCCTCGGCAG GGCGGCCTGC AGAGGGTGAA CGTACCACAC CCAAGATCCA AGAGGTTCCA
  GAAATGGTGG GGGGAAAGAA GCGTTGCCTC TTACCTGGTT CCAGCTTCCG CACACCCTTA
  Y
  CCTATCCGTC CCAGGTAACA GGCGGCCGGC TCACCTTGGG ACCTCCCTCT TCCAGCGCCA
  AGCGCAAGGG TGGACCATTT GTCCAGTTGC CCACTGCTAG CTCCAGCTGC TGGTAGCCGG
  CTGCGAACCT GCGAGCTCCG CCCAGCTCTC TGCCGCCCAA GCCTCCGGCT CGCGTGGCCC
  CTCCTTCTTT TCATACCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440661	MGP_WTSI_2_164602401	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259997060					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440661	MGP_WTSI_2_164602401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164618821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	3 bp proximal
Tnnc2	troponin C2, fast	260 bp downstream
Tssr760	transcription start site region 760	920 bp downstream
Tssr21644	transcription start site region 21644	584 bp upstream
Tssr21645	transcription start site region 21645	618 bp upstream
Tssr21646	transcription start site region 21646	656 bp upstream
Tssr21647	transcription start site region 21647	841 bp upstream
Tssr21648	transcription start site region 21648	1041 bp upstream
Tssr27530	transcription start site region 27530	906 bp downstream
Tssr27531	transcription start site region 27531	1072 bp downstream
Tssr27532	transcription start site region 27532	1090 bp downstream
Tssr27533	transcription start site region 27533	1134 bp downstream
Tssr27534	transcription start site region 27534	1175 bp downstream
Tssr27535	transcription start site region 27535	1305 bp downstream