rs260002928 SNP Detail

Summary

• ID
  rs260002928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135805747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAGAAT CAGCAGCATG
  GGCCCTGGAG ATTGCACTCA GGCTTGGCAG CCCGCTTCTC TGCCCACTGA ACCATTACCA
  GCTCAGACAA GAGGCACTTC CCTCCTCCAG GGCTCCCACT AAGACCCACC CAGTCTTCTG
  GCAGGTCTGT TTAAGTGGCT CATCCTCTGG AAGGTTCTTT TAACATGACC TCCGTTCCAA
  R
  CCCATTTCCC CAGGTTCGCA TATCACTTCT CCAAATGTTG CTCAGATGCC CACTAGATTC
  TGCTCCCCAA AGGCCAGGCA AGAACCGGGG GAGGCATATC CGATTCCAGA CGGGGCTGGT
  AGTACACTTT ATCCATCCAG CAAAGAGGTA GAGGCCAGGG AAGAGAGTCG GCCAGCCATC
  GCCAGCTCTC GTGTGTGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366842163	MGP_WTSI_5_136252763	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260002928					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366842163	MGP_WTSI_5_136252763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135805747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	920 bp proximal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	1756 bp upstream
Rr367967	regulatory region 367967	1347 bp upstream
Rr622430	regulatory region 622430	881 bp proximal
Rr622431	regulatory region 622431	1335 bp proximal
Rr622432	regulatory region 622432	1598 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	257 bp downstream
Tssr49187	transcription start site region 49187	1572 bp upstream
Tssr49188	transcription start site region 49188	1735 bp upstream
Tssr49189	transcription start site region 49189	1754 bp upstream
Tssr49190	transcription start site region 49190	1781 bp upstream
Tssr49191	transcription start site region 49191	1807 bp upstream
Tssr53761	transcription start site region 53761	1389 bp downstream
Tssr53762	transcription start site region 53762	1447 bp downstream