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rs260007134 SNP Detail
Summary
  • ID
    rs260007134
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:30303994 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGTGGCAGA AAGCAAGACA
    GGAAGGGCCC AGGCTGCTGG CACAGTGGCA GGCAAGCGGC AGTAGCGCCA TTCCATACCT
    TCTCTCTCTG CTGCTCGTCC TCCATGGCAG GACTGAGGAT GTGAGCCCTG TCTGTCTGCC
    TGGGCTGGAC CTCTAAGCCT AACTGTGCTA CCAATTGGAT GAGCAGAAAC TAGCAAGAGC
    R
    GCCACCTGCC TGGACTGGAA AGAGAAGACA AGACTCACAA TTCAGGCGTG AAGGGTGGTG
    AGGCAGTAGC CACTGGCGTG GTAGCATCTA AGGCTGGAGC AGTGGTAGCT GTGGGGCTGC
    AGATGCCGCT CTGCCTCTCG CTAGCCTCCA GAAGAGGAGG AGTAAGGCAG GTAAGTGGGC
    TGGAAGTAGG TACTGAGGTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353515380 MGP_WTSI_2_30269502 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260007134 SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353515380 MGP_WTSI_2_30269502 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:30303994 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11436 CpG island 11436 1109 bp proximal
Crat carnitine acetyltransferase Intron
mRNA-UTR
Noncoding-Transcript-Variant
Gm16323 predicted gene 16323 within coordinates
Rr554310 regulatory region 554310 256 bp distal
Rr554311 regulatory region 554311 within coordinates
Rr554312 regulatory region 554312 702 bp proximal
Rr554313 regulatory region 554313 1532 bp proximal
Tssr17115 transcription start site region 17115 1636 bp upstream
Tssr23368 transcription start site region 23368 683 bp upstream
Tssr23369 transcription start site region 23369 122 bp downstream
Tssr23370 transcription start site region 23370 187 bp downstream
Tssr23371 transcription start site region 23371 1320 bp downstream
Tssr23372 transcription start site region 23372 1407 bp downstream
Tssr23373 transcription start site region 23373 1436 bp downstream
Tssr23374 transcription start site region 23374 1456 bp downstream
Tssr23375 transcription start site region 23375 1478 bp downstream
Tssr23376 transcription start site region 23376 1527 bp downstream
Tssr23377 transcription start site region 23377 1590 bp downstream
Tssr23378 transcription start site region 23378 1632 bp downstream
Tssr23379 transcription start site region 23379 1652 bp downstream
Tssr23380 transcription start site region 23380 1785 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory