rs260007959 SNP Detail

Summary

• ID
  rs260007959
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86541233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCGAG GGAACGAGAT
  GGTCCCTGAA ACCCCTGTAG GCCACCCGGC GTCCCCAACC CAGGTTCAAC GCCCCAAGAA
  CGTTCGAGAA GCGGCCACAC AGGAAGGGGA GGGCGCCCAC TGCCGCCCGG TCACTCACCG
  AAGGTCAGCA GGACACAGCA GAGGCCCAAC ACCCACAGGA CCCTCATGGT GCGTGGCCGG
  Y
  GAGTCGCAAG TCCTTTTCGG TCTCAGGAGC CGCCTCCACC CCCCCAATCC CGAGTCTAAG
  CTCCTCACAC CTCCAGCAGC GCGGTCCGCC CACTAAGCCG CGCGCAGGTC GGGCCGCTTT
  TCACCCCACT GCTTGCGGGC GGGGGACGGG AAACACGAAC TCACCAATCG TGCCTCACCA
  CGCACTCTCT GCACCCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381139402	MGP_WTSI_10_86168114	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs260007959					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381139402	MGP_WTSI_10_86168114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86541233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	within coordinates
Gm54730	predicted gene, 54730	within coordinates
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	within coordinates
Rr436507	regulatory region 436507	70 bp distal
Rr436508	regulatory region 436508	130 bp proximal
Rr436509	regulatory region 436509	486 bp proximal
Tssr95004	transcription start site region 95004	1795 bp downstream
Tssr95005	transcription start site region 95005	1069 bp downstream
Tssr95006	transcription start site region 95006	487 bp upstream
Tssr95007	transcription start site region 95007	514 bp upstream
Tssr98787	transcription start site region 98787	1762 bp upstream
Tssr98788	transcription start site region 98788	1016 bp upstream
Tssr98789	transcription start site region 98789	18 bp downstream
Tssr98790	transcription start site region 98790	84 bp downstream
Tssr98791	transcription start site region 98791	116 bp downstream
Ttc41	tetratricopeptide repeat domain 41	442 bp upstream