rs260022356 SNP Detail

Summary

• ID
  rs260022356
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95720449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGCCCCA ATACTCACTC CCTTTGCATC
  CCCAGCTGTT TTCCCTTTGC CAACTTCCCA AAAGATGACT GACCCAAAGT CTCATGACTA
  CCTAGAGCTC CCACTATGTT CCAGGAGCCT ACTCTATCCT CCCTGCCTGA CTTCATCCCA
  K
  ACACCCTCTC CCTAACACCC CCTCACATAG CTGCCCACCC CTGCCTCCCT CTGCCTTTTT
  AGCCACTGCC GCTCTCTCTC CCCTCCCCTA CCTGTCTCCC AGGTATGCCG TGGCCTGGTG
  AGGGGGGCTC CCACCTCCTT AAGCCCCATT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323819190	CHEV_11_95690937	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260022356					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95720449 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	451 bp downstream
Cpgi3603	CpG island 3603	588 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1140 bp distal
Rr455201	regulatory region 455201	1916 bp distal
Rr455202	regulatory region 455202	1058 bp proximal
Tssr3654	transcription start site region 3654	899 bp upstream
Tssr104394	transcription start site region 104394	1130 bp upstream
Tssr104395	transcription start site region 104395	1701 bp upstream
Tssr104396	transcription start site region 104396	1738 bp upstream
Tssr104397	transcription start site region 104397	1901 bp upstream