rs260027164 SNP Detail

Summary

• ID
  rs260027164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAATCTTA GTTTTAATTT TTAAATCTAC
  AAAATTTGGG CTAGGAACCT TGATTAGGTG CCCACATTTA ACCTTTTTGA TCTTACCTAC
  ACTAAGACCA GCACATCATT TTCTTAAGTT CAAATCTTCA CTATCAAAAT CATTTCTCTA
  R
  AACAGTAGGC AGATGTCAAA CTTGAATTCT GCCTTTTGAA CCATGAAAAA GTACGCCATC
  TACTGGTACC TTCAAGTAAG TTCAGATCTC CTGAGACTAA CCTGACAAAT GTTTTAAAGA
  GGCTCTCCTT ATGTACCAGA AAGCCTAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920382	CHEV_3_123209766	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs260027164					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	1090 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	251 bp downstream
Rr397991	regulatory region 397991	within coordinates
Rr584523	regulatory region 584523	50 bp proximal
Rr584524	regulatory region 584524	185 bp proximal
Rr584525	regulatory region 584525	1526 bp proximal
Snhg8	small nucleolar RNA host gene 8	704 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	1089 bp downstream
Tssr31551	transcription start site region 31551	1702 bp upstream
Tssr31552	transcription start site region 31552	1740 bp upstream
Tssr35502	transcription start site region 35502	1482 bp downstream