rs260034221 SNP Detail

Summary

• ID
  rs260034221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120239843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCGAAA CTGCCAAGCC
  CGGGGCGGGC CGCGCCCCGA TCTGGGGTGA GTCCCGTGGC CCCCGCCCCT ATGTGAATCC
  TGTGCCCCGC ACACCCCCCA GGACCTTTCT CTACAGGGTC CGTGTGTGCC TGGCTGGGGA
  CGGGCTGGAG GGATTCCCGG GGGTCCGGGG AGCGGCCATC ACATCCCAGT CACGTGGGAG
  R
  GGGTCACCAG TTCTTCCACT TCAGCCATGT CCCTTTATTG GAGGAGGGGT CGTCACGGGG
  TTGGGTGTCC CTGGGCATCA AAGAAGGTGG TGGTGGTGGT GTGAGTGGGC ATTGTGTTAT
  GCTGGCTTTG CGGGACACAT TGTAGGGAAA CTGAGGCAGG GGAAGTCTCC CGACTTTCAG
  GATGGTCCAG CCCCGCCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384941869	MGP_WTSI_11_120210331	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs260034221					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941869	MGP_WTSI_11_120210331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120239843 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	within coordinates
Actg1	actin, gamma, cytoplasmic 1	522 bp upstream
Cpgi4301	CpG island 4301	within coordinates
Gm72337	predicted gene, 72337	within coordinates
Mir6935	microRNA 6935	1604 bp upstream
Rr461639	regulatory region 461639	750 bp distal
Rr461640	regulatory region 461640	553 bp distal
Rr461641	regulatory region 461641	within coordinates
Rr461642	regulatory region 461642	556 bp proximal
Rr461643	regulatory region 461643	1198 bp proximal
Rr461644	regulatory region 461644	1597 bp proximal
Tssr3756	transcription start site region 3756	261 bp upstream
Tssr3757	transcription start site region 3757	1254 bp upstream
Tssr106280	transcription start site region 106280	235 bp downstream
Tssr112287	transcription start site region 112287	1558 bp upstream
Tssr112288	transcription start site region 112288	828 bp upstream
Tssr112289	transcription start site region 112289	772 bp upstream
Tssr112290	transcription start site region 112290	509 bp upstream
Tssr112291	transcription start site region 112291	458 bp upstream
Tssr112292	transcription start site region 112292	226 bp upstream
Tssr112293	transcription start site region 112293	397 bp downstream
Tssr112294	transcription start site region 112294	827 bp downstream